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  <front>
    <journal-meta><journal-id journal-id-type="publisher">HESS</journal-id><journal-title-group>
    <journal-title>Hydrology and Earth System Sciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">HESS</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Hydrol. Earth Syst. Sci.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1607-7938</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/hess-25-769-2021</article-id><title-group><article-title>Accretion, retreat and transgression of coastal wetlands experiencing sea-level rise</article-title><alt-title>Accretion, retreat and transgression of coastal wetlands experiencing sea-level rise</alt-title>
      </title-group><?xmltex \runningtitle{Accretion, retreat and transgression of coastal wetlands experiencing sea-level rise}?><?xmltex \runningauthor{A.~Breda et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Breda</surname><given-names>Angelo</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3387-8648</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Saco</surname><given-names>Patricia M.</given-names></name>
          <email>patricia.saco@newcastle.edu.au</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Sandi</surname><given-names>Steven G.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5463-8307</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Saintilan</surname><given-names>Neil</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9226-2005</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Riccardi</surname><given-names>Gerardo</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Rodríguez</surname><given-names>José F.</given-names></name>
          <email>jose.rodriguez@newcastle.edu.au</email>
        </contrib>
        <aff id="aff1"><label>1</label><institution>School of Engineering and Centre for Water Security and Environmental Sustainability, <?xmltex \hack{\break}?> University of Newcastle, Callaghan 2308, Australia</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Environmental Sciences, Macquarie University, North Ryde 2109, Australia</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Hydraulics and Research Council of National University of Rosario, Rosario 2000, Argentina</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Patricia M. Saco (patricia.saco@newcastle.edu.au) and José F. Rodríguez (jose.rodriguez@newcastle.edu.au)</corresp></author-notes><pub-date><day>18</day><month>February</month><year>2021</year></pub-date>
      
      <volume>25</volume>
      <issue>2</issue>
      <fpage>769</fpage><lpage>786</lpage>
      <history>
        <date date-type="received"><day>25</day><month>August</month><year>2020</year></date>
           <date date-type="accepted"><day>24</day><month>December</month><year>2020</year></date>
           <date date-type="rev-recd"><day>18</day><month>December</month><year>2020</year></date>
           <date date-type="rev-request"><day>14</day><month>September</month><year>2020</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2021 Angelo Breda et al.</copyright-statement>
        <copyright-year>2021</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021.html">This article is available from https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021.html</self-uri><self-uri xlink:href="https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021.pdf">The full text article is available as a PDF file from https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e143">The vulnerability of coastal wetlands to future sea-level
rise (SLR) has been extensively studied in recent years, and models of
coastal wetland evolution have been developed to assess and quantify the
expected impacts. Coastal wetlands respond to SLR by vertical accretion and
landward migration. Wetlands accrete due to their capacity to trap sediments
and to incorporate dead leaves, branches, stems and roots into the soil, and they migrate driven by the preferred inundation conditions in terms of
salinity and oxygen availability. Accretion and migration strongly interact, and they both depend on water flow and sediment distribution within the
wetland, so wetlands under the same external flow and sediment forcing but
with different configurations will respond differently to SLR. Analyses of
wetland response to SLR that do not incorporate realistic consideration of
flow and sediment distribution, like the bathtub approach, are likely to
result in poor estimates of wetland resilience. Here, we investigate how
accretion and migration processes affect wetland response to SLR using a
computational framework that includes all relevant hydrodynamic and sediment
transport mechanisms that affect vegetation and landscape dynamics, and it
is efficient enough computationally to allow the simulation of long time
periods. Our framework incorporates two vegetation species, mangrove and
saltmarsh, and accounts for the effects of natural and manmade features like
inner channels, embankments and flow constrictions due to culverts. We apply
our model to simplified domains that represent four different settings found
in coastal wetlands, including a case of a tidal flat free from obstructions
or drainage features and three other cases incorporating an inner channel,
an embankment with a culvert, and a combination of inner channel, embankment
and culvert. We use conditions typical of south-eastern Australia in terms of vegetation, tidal range and sediment load, but we also analyse situations
with 3 times the sediment load to assess the potential of biophysical feedbacks to produce increased accretion rates. We find that all wetland
settings are unable to cope with SLR and disappear by the end of the
century, even for the case of increased sediment load. Wetlands with good
drainage that improves tidal flushing are more resilient than wetlands with
obstacles that result in tidal attenuation and can delay wetland submergence by 20 years. Results from a bathtub model reveal systematic
overprediction of wetland resilience to SLR: by the end of the century, half
of the wetland survives with a typical sediment load, while the entire
wetland survives with increased sediment load.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e155">The vulnerability of coastal wetlands to future sea-level rise (SLR) has been extensively studied in recent years, and models of coastal wetland evolution
have been developed to assess and quantify the expected impacts (Alizad et
al., 2016b; Belliard et al., 2016; Clough et al., 2016; D'Alpaos et al.,
2011; Fagherazzi et al., 2012; Kirwan and Megonigal, 2013; Krauss et al.,
2010; Lovelock et al., 2015b; Mogensen and Rogers, 2018; Rodriguez et al.,
2017; Rogers et al., 2012;<?pagebreak page770?> Schuerch et al., 2018). Predictions vary widely,
which is not surprising given the complexity of the processes involved and
the practical challenges associated with representing interactions at a
variety of spatial and temporal scales. Coastal wetlands respond to SLR by
vertical accretion and landward migration. Vertical accretion occurs due to
the capacity of wetland vegetation to trap sediments and to incorporate dead
leaves, branches, stems and roots into the soil, building up their vertical elevation and counteracting submergence due to SLR. Landward migration is driven by the preferred inundation conditions of wetland vegetation, which
is continuously moving up the wetland slope due to SLR. These two main
processes interact, but they also integrate a number of biophysical
exchanges that occur on smaller scales. Accretion is a function of many other variables like the tidal regime, sediment availability and type of
vegetation (Fagherazzi et al., 2012; Lovelock et al., 2015a). Vegetation
preference is dictated by salinity, oxygen availability and the presence of
phytotoxins in the soil (Bilskie et al., 2016; Crase et al., 2013).</p>
      <p id="d1e158">Studies show that different modelling approaches used to address the
interaction between these variables may lead to divergent results (Alizad et
al., 2016a; Rogers et al., 2012). For the sake of simplicity, some previous
studies have adopted an approach where water levels throughout the wetland
remain the same as those observed at the inlet, i.e. the bathtub approach
(D'Alpaos et al., 2011; Kirwan and Guntenspergen, 2010; Kirwan et al.,
2010, 2016a; Lovelock et al., 2015b). Most of these bathtub
model results show that vegetation in coastal areas can produce accretion
rates similar to sea-level rise predictions, therefore maintaining their
elevation in the tidal prism, except when tidal range and sediment supply
are very low. However, the projections of coastal wetland resilience under
high rates of SLR appear to be at odds with paleo-environmental reconstructions of wetland responses to rising seas during the early
Holocene (Horton et al., 2018; Saintilan et al., 2020). One explanation for this discrepancy is that models fail to reproduce the flow attenuation
caused by the friction induced by substrate cover and specific wetland
features like inner channels, embankments and flow constrictions (Hunt et
al., 2015) and its effects on sediment availability, which may result in
overestimation of wetland accretion rates (Rodriguez et al., 2017). Bathtub
models do not provide information on flow discharges or velocities, so they
need an independent specification of sediment concentration.</p>
      <p id="d1e161">On the other hand, more detailed description of hydrodynamic and sediment
transport mechanisms can be incorporated into the computations of wetland
dynamics using conventional two- or three-dimensional flow and sediment transport models (Ganju et al., 2015; Lalimi et al., 2020; Temmerman et al.,
2005). A detailed description of flow and sediment transport processes can
potentially result in a better estimation of wetland dynamics including
accretion and migration processes, but implementation can be seriously
limited by computational cost and data availability (Beudin et al., 2017).</p>
      <p id="d1e164">Here, we investigate how accretion and migration processes affect wetland
response to SLR using a computational framework that integrates detailed
hydrodynamic and sediment transport mechanisms that affect vegetation and
landscape dynamics and that is efficient enough to allow the simulation of
long time periods. The framework consists of a fast-performance quasi-two-dimensional hydrodynamic model (Riccardi, 2000; Rodriguez et al., 2017) that we have
extensively tested in wetlands (Rodriguez et al., 2017; Saco et al.,
2019; Sandi et al., 2018, 2019, 2020a, b) and a sediment advection transport model (Garcia et al., 2015) that
we couple with vegetation formulations for preference to tidal conditions to
obtain realistic predictions of wetland accretion and migration under SLR.
Our framework incorporates two vegetation species, mangrove and saltmarsh,
and accounts for the effects of manmade features like inner channels,
embankments and flow constrictions due to culverts. We apply our model to
simplified domains that represent distinct areas within a real wetland, in
which we are able to characterise the effects of particular natural and
manmade wetland features like vegetation types, culverts, embankments and
channels.</p>
      <p id="d1e168">Coastal wetlands are found over a broad spectrum of geomorphological
settings (Woodroffe et al., 2016) and under a diverse set of anthropogenic
interventions (Temmerman and Kirwan, 2015). While our results strictly apply
to areas in a particular wetland in south-eastern Australia, each of our selected domains focusses on specific geomorphological characteristics that may also be present in other wetlands worldwide. We study wetland evolution
on domains with no drainage network or manmade structures, which is relevant
for some low-tide wetland environments where no human intervention has
occurred (Leong et al., 2018; Oliver et al., 2012; Tabak et al., 2016). We
simulate the dynamics of internal channels, which can provide insight into wetland studies with strong influence of natural channels (Reef et al.,
2018; Silvestri et al., 2005) or manmade drainage channels (Manda et al.,
2014). We carry out simulations with embankments and culverts representing flood-sheltered environments, which can resemble intentional flood
attenuation works for coastal protection (Van Loon-Steensma et al., 2015) or
unintentional flood attenuation as a result of roads, tracks, pipes and other infrastructure typical of heavily human-occupied coasts (Kirwan and
Megonigal, 2013; Rodriguez et al., 2017; Temmerman et al., 2003).</p>
      <p id="d1e171">Also, and in order to make our results more widely relevant, we analyse the
sensitivity of our predictions to the sediment load coming into the wetland
by including sediment-poor and sediment-rich simulations. The incoming
sediment load has been proposed as one of the main factors influencing the resilience of coastal wetlands to SLR (Lovelock et al., 2015a; Schuerch et
al., 2018) and is one of the components of predictive wetland evolution
models with more uncertainty, due both to our limited understanding of
sediment–flow–vegetation processes and our inability to predict sediment loads in a changing future.</p>
</sec>
<?pagebreak page771?><sec id="Ch1.S2">
  <label>2</label><title>Experimental design and methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Design of simulations</title>
      <p id="d1e189">The flow in tidal wetlands can be quite complex because of the interaction
of the tidal flow with natural and manmade features like vegetation,
topography, channels, culverts and embankments. For that reason, results for
a particular wetland may have limited applicability to another wetland with
different features. In this contribution, we analyse some of the most common
features of wetlands in isolation in order to gain a better understanding of
the contribution of each feature to the overall wetland response and how it influences the response to sea-level rise. For that purpose, we study the
response of wetlands with limited complexity using a state-of-the-art ecogeomorphological model on four hypothetical tidal flats that characterise
specific areas of a typical south-eastern Australian coastal wetland that we have studied before (Fig. 1a, b) (Rodriguez et al., 2017). Simulation 1 uses a
bathtub approach over a consistently sloping tidal flat initially vegetated
by mangrove, saltmarsh and freshwater vegetation (Fig. 1c), in which water
levels are considered uniform over the domain and no special features are
taken into account. In contrast, for Simulations 2 to 5, water levels are
calculated with the hydrodynamic model, which allows for the inclusion of
attenuation effects from vegetation and special features. Simulation 2
considers a vegetated sloping tidal flat with no special features, Simulation 3 incorporates a drainage channel 0.4 <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> deep and 5 <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> wide to the
vegetated tidal flat, Simulation 4 includes an embankment with a culvert
(0.8 <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> wide and 0.5 <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> tall) in the middle of the vegetated flat, and
Simulation 5 combines both a drainage channel and an embankment with a
culvert (Fig. 1d). These different setups can characterise different
settings found in wetlands but can also apply to different parts of a more complex wetland, as shown in Fig. 1b. In all simulations the tidal flat is
620 <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> long (main flow direction) and 310 <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> wide (cross section), divided into 10 <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> by 10 <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> grid cells, with a gentle slope of 0.001 <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Boundary
conditions include input tides described by a sinusoidal function with 1.3 <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>
amplitude and 12 <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> period and a constant sediment concentration at the wetland inlet (Fig. 1c). In each simulation we tested wetland evolution
under sea-level rise from 2000 to 2100 (high-emission scenario) by considering two sediment input conditions, a low sediment supply representing current
conditions and a high sediment supply. The high sediment supply condition
simulations are justified due to the uncertainty of climatic conditions and
the possibility of increases in intensity of storm patterns in the area,
which may result in increased sediment loads in the Hunter River. Sediment loads may also increase due to changes in land use practices (Rodriguez et
al., 2020).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e292">Field site and areas within the site characterised by the numerical simulations: <bold>(a)</bold> Area E of Kooragang wetlands, <bold>(b)</bold> areas within the wetland where the simplified simulations represent the dominant processes, <bold>(c)</bold> schematic longitudinal view of the domain setup and sinusoidal wave input (adapted from Rodriguez et al., 2017), and <bold>(d)</bold> schematic isometric view of each simulated domain and their hydraulic features. Vegetation cover is only indicative and roughly corresponds to early stages of the simulations.  Elevation unit, mAMSL, stands for metres above mean sea level.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021-f01.png"/>

        </fig>

      <p id="d1e313">The sinusoidal tide represents conditions typical of south-eastern Australian estuaries (Rodriguez et al., 2017) and is repeated during the simulation period (100 years). However, the mean water level is
gradually increased following the IPCC RCP 8.5 scenario of sea-level rise (Church et al., 2013) with
an expected 0.74 <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> increase by year 2100 with respect to the levels in the year 2000.</p>
      <p id="d1e325">We use as a basis for our simulations the ecogeomorphological model (EGM) framework developed by
Rodriguez et al. (2017) but with the addition of a physically based sediment transport formulation. This EGM framework has been extensively calibrated and tested in the Hunter River estuary in Australia and, as such, vegetation functions and parameters correspond to local
conditions. The framework couples multiple models to simulate interactions between overland flow
hydrodynamics, vegetation establishment and growth, sediment concentration and morphodynamics of the
wetland.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Hydrodynamic model</title>
      <p id="d1e336">Water depth time series over the tidal flat are estimated using a
finite-differences quasi-two-dimensional hydrodynamic model (Riccardi, 2000) that has been successfully applied to coastal wetlands (Rodriguez et al., 2017; Sandi
et al., 2018) and floodplains (Sandi et al., 2019, 2020a, b; Saco et al., 2019). The model solves the shallow water
equations using a cells scheme, in which cells are classified into tidal
flat or channel categories to speed up computations. As previously
explained, the domains of all simulations are 630 <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> long by 310 <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> wide,
discretised into <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mn mathvariant="normal">10</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">10</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> cells. For cells representing channels in
Simulations 3 and 5, the width of the cell is reduced to 5 <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> and the elevation is lowered by 0.4 <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. Boundary conditions include water elevations
at the tidal creek and no flow at the lateral and landward boundaries. Because the domains are wide, the effects of lateral model boundaries are
minimal.</p>
      <?pagebreak page773?><p id="d1e391">In each time step, the model solves for water elevations at every cell using mass conservation in a two-dimensional formulation, and then it solves for discharges between cells in each direction using momentum conservation in a one-dimensional formulation. Mass conservation is solved first to compute water surface
elevations:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M18" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="normal">As</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>j</mml:mi></mml:msubsup><mml:msub><mml:mi>Q</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">As</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are surface wetted area and water surface
elevation at cell <inline-formula><mml:math id="M21" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> respectively and <inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:msub><mml:mi>Q</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are the discharges between cell <inline-formula><mml:math id="M23" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> and its <inline-formula><mml:math id="M24" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> neighbouring cells. Using the water surface elevations, the model then computes discharges between cells using the momentum or
energy equation, depending on the particular characteristics of the
connection between cells. For instance, the discharge between two cells on
the vegetated tidal flat is computed as
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M25" display="block"><mml:mrow><mml:msub><mml:mi>Q</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msubsup><mml:mi>R</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow><mml:mfrac><mml:mn mathvariant="normal">2</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:mfrac></mml:msubsup></mml:mrow><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mstyle scriptlevel="+1"><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are respectively the
cross-sectional values of area, wetted perimeter and Manning roughness
computed as an average of the values at cells <inline-formula><mml:math id="M29" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M30" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, and <inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
is the distance between cells. Based on Rodriguez et al. (2017) we adopt
roughness coefficients for mangrove and saltmarsh cells of 0.50 <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>
and 0.15 <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> respectively. For freshwater and non-vegetated cells, Manning's <inline-formula><mml:math id="M34" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> is 0.12 <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, while for the channel cell it is 0.035 <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. For cells in the channel, the full momentum equation is used to account for dynamic and backwater effects (Riccardi, 2000). If the domain
includes a culvert at cell <inline-formula><mml:math id="M37" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, then the discharge between cells <inline-formula><mml:math id="M38" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M39" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> is
computed as
            <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M40" display="block"><mml:mrow><mml:msub><mml:mi>Q</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi>g</mml:mi></mml:mrow></mml:mfenced><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:msup><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:msup></mml:mrow><mml:mrow><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msubsup><mml:mi>C</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:msubsup><mml:mi>A</mml:mi><mml:mi>i</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msubsup><mml:mi>A</mml:mi><mml:mi>k</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          in which <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are respectively the cross-sectional
areas at the <inline-formula><mml:math id="M43" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M44" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> cells and <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is a standard discharge
coefficient for the culvert at cell <inline-formula><mml:math id="M46" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> adopted as 0.8. Equation (<xref ref-type="disp-formula" rid="Ch1.E3"/>)
considered the case of the culvert flowing under the influence of gravity.
For pressurised conditions, a different equation is used (Riccardi, 2000).</p>
      <p id="d1e950">The model equations are solved using an implicit method and a Newton–Raphson algorithm. The time step used in the model solution is 1 <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula> to ensure
numerical stability. Further explanation about the application of this model
in a similar EGM framework can be found in Sandi et al. (2018).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Vegetation model</title>
      <p id="d1e969">Vegetation in coastal wetlands is driven by the tidal regime, so we use
water depth time series to compute the mean depth below high tide, <inline-formula><mml:math id="M48" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>, and the hydroperiod, <inline-formula><mml:math id="M49" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula>, on every cell as a descriptor of the tidal regime. These
variables are the input for all the other models of the EGM framework. The
first variable represents the average maximum water depth on spring tides.
In this case we use a sinusoidal wave, so <inline-formula><mml:math id="M50" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> is the maximum depth. The
hydroperiod accounts for the duration of the inundation period and is
computed as the proportion of time during which a minimum water depth is
present during the simulation time.</p>
      <p id="d1e993">The values of <inline-formula><mml:math id="M51" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M52" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> define the suitable conditions for vegetation
establishment and survival at each point in the wetland based on thresholds
that have been tested for south-eastern Australian estuaries (Rodriguez et al., 2017). Thus, the observed threshold applies to <italic>Avicennia marina</italic> (grey mangrove) and to a
composition of saltmarsh species <italic>Sarcocornia quinqueflora</italic> and <italic>Sporobolus virginicus</italic>. Mangrove depends primarily on
hydroperiod, requires frequent inundations and establishes itself in areas where <inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:mn mathvariant="normal">10</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi><mml:mo>&lt;</mml:mo><mml:mi>H</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">50</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:mi>D</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M55" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> is
calculated as the fraction of time where the water depth is higher than or
equal to 14 <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>, the typical height of the pneumatophores. Saltmarsh
tolerates prolonged inundations and can survive in areas where <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:mi>H</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">80</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> but cannot endure inundation depths above its height (25 <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>), so we limit <inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:mi>D</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula>. We consider that, if conditions suit both mangrove
and saltmarsh, mangrove will expand over saltmarsh areas (Saintilan et al.,
2014). In areas not exposed to saltwater (<inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:mi>D</mml:mi><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula>),
we assume the presence of freshwater vegetation, and if none of the above
conditions applies, areas are considered to be non-vegetated.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Sediment model</title>
      <p id="d1e1152">The original version of the framework used in the Hunter estuary applies a
linear empirical relationship between average sediment concentration in the
water column and the water depth. Here, we use a more physically based
equation for fine sediment transport and deposition processes coupled to the
hydrodynamic simulations. The sediment model solves the quasi-two-dimensional continuity equation of suspended sediment neglecting horizontal diffusion (Garcia et
al., 2015). The continuity equation for the <inline-formula><mml:math id="M62" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>th cell reads as follows:
            <disp-formula id="Ch1.E4" content-type="numbered"><label>4</label><mml:math id="M63" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="normal">As</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>h</mml:mi><mml:mi>C</mml:mi></mml:mrow></mml:mfenced><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">As</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="italic">φ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>j</mml:mi></mml:msubsup><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>Q</mml:mi><mml:mi>C</mml:mi></mml:mrow></mml:mfenced><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the water depth of cell <inline-formula><mml:math id="M65" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> (m);  <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the sediment
concentration (<inline-formula><mml:math id="M67" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), <inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">φ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the downward vertical flux of
fine sediment (<inline-formula><mml:math id="M69" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), and <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are the sediment
concentrations in the <inline-formula><mml:math id="M71" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> neighbouring cells. For fine-grained sediment typical of estuarine environments, the downward flux can be expressed as (Krone,
1962; Mehta and McAnally, 2008)
            <disp-formula id="Ch1.E5" content-type="numbered"><label>5</label><mml:math id="M72" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">φ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>-</mml:mo><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">b</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/></mml:mrow></mml:msub><mml:mo>;</mml:mo><mml:mspace width="0.33em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.33em"/><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the fall/settling velocity of suspended sediment particles
(<inline-formula><mml:math id="M74" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), <inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">b</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the magnitude of bed shear stress in cell <inline-formula><mml:math id="M76" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>
(<inline-formula><mml:math id="M77" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Pa</mml:mi></mml:mrow></mml:math></inline-formula>), and <inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the critical bed shear stress for deposition (<inline-formula><mml:math id="M79" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Pa</mml:mi></mml:mrow></mml:math></inline-formula>).
Velocities were converted to bed shear stresses using
            <disp-formula id="Ch1.E6" content-type="numbered"><label>6</label><mml:math id="M80" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">b</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">ρ</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msubsup><mml:mi>U</mml:mi><mml:mi>i</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          In Eq. (<xref ref-type="disp-formula" rid="Ch1.E6"/>)  <inline-formula><mml:math id="M81" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> is the water density and  <inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is a friction
coefficient set at 0.05. The parameters <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were varied
to reproduce similar levels of accretion observed in the wetlands where the
original modelling framework was applied (Rodriguez et al., 2017). The
values obtained were <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">Pa</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mrow></mml:math></inline-formula>, which are consistent with values reported by Larsen et al.
(2009) and Temmerman et al. (2005). This model does not have an erosion
term, which is not a bad simplification over vegetated surfaces that receive
flows that are typically very slow.</p>
      <p id="d1e1625">Equation (<xref ref-type="disp-formula" rid="Ch1.E4"/>) is solved using the same numerical scheme than the water mass
conservation (Eq. 1), providing a time series of sediment concentrations in each cell of the domain. However, as the soil elevation model (next
section) works at a larger timescale and requires the annual concentration, <inline-formula><mml:math id="M87" display="inline"><mml:mover accent="true"><mml:mi>C</mml:mi><mml:mo mathvariant="normal">¯</mml:mo></mml:mover></mml:math></inline-formula>, a weighted average is computed for each cell:
            <disp-formula id="Ch1.E7" content-type="numbered"><label>7</label><mml:math id="M88" display="block"><mml:mrow><mml:mover accent="true"><mml:mi>C</mml:mi><mml:mo mathvariant="normal">¯</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow><mml:mi>M</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow><mml:mi>M</mml:mi></mml:msubsup><mml:msub><mml:mi>h</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M89" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> is the time in the hydrodynamic simulation with <inline-formula><mml:math id="M90" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula> the final
step; <inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the sediment concentration and the water depth respectively at time <inline-formula><mml:math id="M93" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>.</p>
      <p id="d1e1746">The sediment transport equation based on mass conservation (Eq. 4) cannot be
used in the case of the bathtub simulations because the bathtub model does
not provide information on water discharge and velocity. For the bathtub
simulations, we used the linear relation between water depth<?pagebreak page774?> and
concentration empirically developed by Rodriguez et al. (2017). Based on the
measured data, the fitted equation is
            <disp-formula id="Ch1.E8" content-type="numbered"><label>8</label><mml:math id="M94" display="block"><mml:mrow><mml:mover accent="true"><mml:mi>C</mml:mi><mml:mo mathvariant="normal">¯</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0.55</mml:mn><mml:mi>D</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.32</mml:mn><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M95" display="inline"><mml:mover accent="true"><mml:mi>C</mml:mi><mml:mo mathvariant="normal">¯</mml:mo></mml:mover></mml:math></inline-formula> is the average sediment concentration (<inline-formula><mml:math id="M96" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), and
<inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mo>max⁡</mml:mo></mml:msub></mml:mrow></mml:math></inline-formula> is the concentration at the wetland inlet.</p>
      <p id="d1e1819">This equation is much simpler and has different parameters than the sediment
transport equation;  however, for very simple flow conditions it should
produce comparable results. We confirmed the suitability of the simple model
by comparing EGM results using the bathtub approach (with the linear
sediment relation) and a full hydrodynamic and sediment transport EGM over a
smooth topography. Both the hydrodynamics and the resulting elevation
changes of both models were very similar (see Fig. S1 in the Supplement).</p>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Soil elevation change model</title>
      <p id="d1e1831">Our EGM framework adopts the model originally proposed by Morris et al.
(2002) and later modified by Kirwan and Guntenspergen (2010) to estimate the
increase in soil elevation due to accretion as a function of hydrodynamic and ecological conditions. We first compute the biomass production, <inline-formula><mml:math id="M98" display="inline"><mml:mi>B</mml:mi></mml:math></inline-formula>
(<inline-formula><mml:math id="M99" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), by using the parabolic equation
            <disp-formula id="Ch1.E9" content-type="numbered"><label>9</label><mml:math id="M100" display="block"><mml:mrow><mml:mi>B</mml:mi><mml:mo>=</mml:mo><mml:mi>a</mml:mi><mml:msup><mml:mi>D</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mi>b</mml:mi><mml:mi>D</mml:mi><mml:mo>+</mml:mo><mml:mi>c</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M101" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M102" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>, and <inline-formula><mml:math id="M103" display="inline"><mml:mi>c</mml:mi></mml:math></inline-formula> are parameters fitted to field data, for each
vegetation type. Then, the surface elevation change rate, <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>E</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M105" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>),
is calculated using
            <disp-formula id="Ch1.E10" content-type="numbered"><label>10</label><mml:math id="M106" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>E</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi>C</mml:mi><mml:mo mathvariant="normal">¯</mml:mo></mml:mover><mml:mfenced close=")" open="("><mml:mrow><mml:mi>q</mml:mi><mml:mo>+</mml:mo><mml:mi>k</mml:mi><mml:mi>B</mml:mi></mml:mrow></mml:mfenced><mml:mi>D</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M107" display="inline"><mml:mi>q</mml:mi></mml:math></inline-formula> is a depositional parameter and <inline-formula><mml:math id="M108" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is a vegetation sediment
trapping coefficient. For all five parameters of Eqs. (<xref ref-type="disp-formula" rid="Ch1.E9"/>) and (<xref ref-type="disp-formula" rid="Ch1.E10"/>) we
used the values adopted in Rodriguez et al. (2017) and Sandi et al. (2018)
(see Table 1) for an Australian wetland. Although the
term <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">As</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="italic">φ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in Eq. (<xref ref-type="disp-formula" rid="Ch1.E4"/>) provides an amount of settled
sediment that contributes to accretion, it only considers the gravitational
settling of sediment and does not include many other important accretion
processes associated with the presence of vegetation. The full effects of sediment and vegetation are considered in Eq. (<xref ref-type="disp-formula" rid="Ch1.E10"/>), which produces much
larger accretion values (see Fig. S2 in the Supplement).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Table}?><label>Table 1</label><caption><p id="d1e2023">Parameters of the soil surface elevation model.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Model parameter</oasis:entry>
         <oasis:entry colname="col2">Mangrove</oasis:entry>
         <oasis:entry colname="col3">Saltmarsh</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M110" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M111" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6037.6</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">767</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M114" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M115" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M116" display="inline"><mml:mn mathvariant="normal">7848.9</mml:mn></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M117" display="inline"><mml:mn mathvariant="normal">8384</mml:mn></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M118" display="inline"><mml:mi>c</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M119" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1328.3</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M121" display="inline"><mml:mn mathvariant="normal">0</mml:mn></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M122" display="inline"><mml:mi>q</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M123" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mn mathvariant="normal">9</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:mn mathvariant="normal">9</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M126" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M127" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:mn mathvariant="normal">6.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e2351">The EGM simulations use a yearly time step; i.e. the computed biomass and accretion represent an average condition within this period. We choose a yearly time step as vegetation dynamics does not respond instantaneously to flow and depositional processes (Alizad et al., 2016b; Saco and
Rodríguez, 2013; Schuerch et al., 2018). Our model does not account for
erosion and diffusion processes and also does not take into account the
redistribution of deposited sediment by waves. Because of that, the
resulting accretion from Eq. (<xref ref-type="disp-formula" rid="Ch1.E10"/>) is noisy and varies considerably over very short distances. In order to work with a more realistic distribution of
deposition over the tidal flat, we smooth the topography by applying a very simple diffusion model. The diffusion model does not change the general
trends of deposition and avoids localised peaks of excessive deposition.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Spatial patterns of accretion and vegetation</title>
      <p id="d1e2372">In order to show the characteristic spatial patterns of each of the typical
cases analysed, we first show in Fig. 2 accumulated accretion (<inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and vegetation distribution in 2050 under the expected SLR scenario for each
of the five numerical simulations, including the bathtub and the other four
simulations that use a hydrodynamic and sediment transport (HST) model. Details on the temporal evolution of topography and vegetation for each of
the simulations are provided later in the paper.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e2389">Accumulated accretion (top) and vegetation maps (bottom) in 2050 for low sediment input corresponding to <bold>(a)</bold> Simulation 1, <bold>(b)</bold> Simulation 2, <bold>(c)</bold> Simulation 3, <bold>(d)</bold> Simulation 4, and <bold>(e)</bold> Simulation 5.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021-f02.png"/>

        </fig>

      <p id="d1e2413">Figure 2 shows that accumulated accretion is homogeneous in the transverse
direction for the simulations without the channel (Fig. 2a, b, d), as there is
no lateral flow and the changes in sedimentation occur in the longitudinal
direction only. For the simulations with the central drainage channel (Fig. 2c, e) there is a marked concentration of flow and sediment accumulation
close to the channel. Some of the accumulated accretion patterns of the
simulations with the channel presented in Fig. 2 are remarkably similar to
the results from Chen et al. (2010) on a similar geometry.</p>
      <p id="d1e2417">It can be seen from the figure that all simulations show a general decrease in accretion with distance to the tidal input (which can represent a tidal
creek or the river), which is expected because the source of sediment is at
the tidal input. However, each simulation has a characteristic elevation
profile and vegetation distribution, and they are all quite different from
the predictions of the bathtub model. Figure 2a shows that the bathtub
simulation displays a smoother and longer transition of accumulated
accretion. A slight concentration of accretion is observed at 500 <inline-formula><mml:math id="M131" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from the
creek due to the initial position of high biomass saltmarsh. The bathtub case has flood and ebb flows of the same duration, since there is no flow
attenuation. This keeps the hydroperiod within a range that promotes
mangrove establishment over most of the<?pagebreak page775?> wetland. Saltmarsh is limited to the
upper parts of the tidal flat.</p>
      <p id="d1e2428">The other simulations (2 to 5) use the hydrodynamic and sediment transport
(HST) models instead of the bathtub approximation. In these cases, accretion
presents an exponential shape with a sharper decrease than the bathtub
model, and vegetation establishment is strongly controlled by the effects of
vegetation roughness, channel and culverts. In contrast to the bathtub model
results, all HST simulations show mangrove dieback in lower areas, which is
caused by a higher hydroperiod due to attenuated ebb flows.</p>
      <p id="d1e2431">Simulation 2, with the undisturbed tidal flat (Fig. 2b), shows the effect of
hydraulic resistance due to the vegetation roughness only, which generates
an elevation mound closer to the tidal input than the bathtub simulation. In
Simulation 3 (Fig. 2c), the inner channel increases the drainage of the
surrounding areas, thus reducing the hydroperiod in the vicinity of the
channel and allowing mangroves to persist close to the tidal creek. The
channel also enhances sediment delivery farther from the tidal input, which
causes an increase in accretion around the mid-point of the flat (300 <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from
the tidal creek). However, this effect is concentrated near the channel and
fades away as flow is directed into the tidal flat. In Simulation 4 (Fig. 2d), the flow is restricted by an embankment and a culvert, so the
hydroperiods in the upper wetland are higher. This effect reduces mangrove
migration and its encroachment on saltmarsh areas. In Simulation 5 with
embankment and channel (Fig. 2e), the channel promotes<?pagebreak page776?> mangrove landwards of
the embankment and also the stabilisation of saltmarsh areas in the upper sections of the tidal flat as they receive more sediment (Fig. 2e).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Evolution of accumulated accretion profiles</title>
      <p id="d1e2450">Figure 3 shows the results of surface elevation change (<inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in each
simulation for the years 2020, 2040, 2060 and 2100 for low sediment input
conditions (corresponding to contemporary rates in the Hunter estuary), in
terms of accumulated accretion profiles along the main flow direction. For
the simulations with the central drainage channel (Simulations 3 and 5), we
have included two profiles at different transverse locations, one close to
the channel and one 150 <inline-formula><mml:math id="M134" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> away in the middle of the tidal flat.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e2475">Longitudinal profiles of accumulated accretion (<inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M136" display="inline"><mml:mi>m</mml:mi></mml:math></inline-formula>) for a sediment supply of 37 <inline-formula><mml:math id="M137" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. The vertical black line represents the embankment with culvert. The “channel” profile represents the elevation gain near the central channel, while the “tidal flat” profile is situated in the middle of the tidal flat. Note: simulation starts in the year 2000.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021-f03.png"/>

        </fig>

      <p id="d1e2518">During the first 2 decades, the vegetation type plays an important role in the longitudinal distribution of the accumulated accretion profiles. By 2020
(first column of Fig. 3) the profiles show a continuous decrease from the
tidal input up to 300 to 350 <inline-formula><mml:math id="M138" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> approximately, which coincides with the
transition from mangrove to saltmarsh in the initial vegetation
distributions (see Fig. 5 later in the paper). This occurs due to the dynamics of sediment transport (more deposition close to the tidal input)
and also due to the reduction of the mangrove biomass away from the tidal
creek (reductions in <inline-formula><mml:math id="M139" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>; see Eq. 10). The increase in <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> at the transition is due to the saltmarsh having a higher biomass and trapping
efficiency than mangrove at that particular value of <inline-formula><mml:math id="M141" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>. Landward of the
transition, <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> decreases with decreases in saltmarsh biomass. This
general dynamics is disrupted by the presence of the culvert because it
limits the amount of sediment reaching the upper areas of the tidal flat.</p>
      <p id="d1e2564">Changes in <inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> slow down after 2060 in all simulations except for the
bathtub case. This is due to reductions in vegetation as most of the lower
areas of the tidal flat have experienced submergence and vegetation loss.
Small increases in <inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> occur in the upper areas in the cases in which
the central channel promotes tidal flushing (Simulations 3 and 5), but this
effect is concentrated in areas close to the channel.</p>
      <p id="d1e2587">None of the simulations using the HST model produces <inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> results
similar to the bathtub simulations. The simulation with the central channel
(Simulation 3) presents values of <inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> near the channel that are close to the results of the bathtub simulation during the first years, but over
time, the results diverge. The increased <inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> values are limited to
areas next to the channel, and they quickly decline as the flow is directed
into the tidal flat. In general, the outcomes from the HST model show a reduction in the water levels and total accretion compared to the bathtub
results. Furthermore, when the culvert is introduced in the simulation
(Simulations 4 and 5), the main effect is a drastic reduction of <inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> in the upper areas of the domain.</p>
      <p id="d1e2630">Figure 3 results correspond to a situation with a low sediment input of 37 <inline-formula><mml:math id="M149" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, typical of current south-eastern Australian conditions (Rodriguez et al., 2017). Similar patterns but with larger values of accumulated accretion were
obtained for a higher sediment input of 111 <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Fig. S3 in the
Supplement).</p>
      <p id="d1e2667">The reduction in accretion in the simulations that consider the actual
features of the wetland can be better appreciated in Fig. 4, in which we
compare domain-average <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> of all simulations over time. Fig. 4
includes results for a low sediment input of 37 <inline-formula><mml:math id="M152" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Fig. 4a) and for
a high sediment input of 111 <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Fig. 4b). The figure also includes
the values of mean sea level for each year to give an idea of the submergence conditions in the wetlands.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e2716">Sea-level rise and domain-average accumulated accretion over time for all simulations for <bold>(a)</bold> low sediment input and <bold>(b)</bold> high sediment input.  Results from Rodriguez et al. (2017) and Sandi et al. (2018) corresponding to the entire Area E wetland are included for comparison.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021-f04.png"/>

        </fig>

      <p id="d1e2732">There is a clear difference between the accretion generated in the bathtub
simulation and the rest of the simulations. In our simulations, accretion is a function of sediment concentration and depth below mean high tide
(<inline-formula><mml:math id="M154" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>). The bathtub assumption overpredicts both inputs over the entire domain,
thus generating higher accretion values. In all HST simulations, the
combination of a reduction in <inline-formula><mml:math id="M155" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> because of flow attenuation and the
exponential decay of sediment concentration results in less accretion than
in the bathtub simulation. In the case of low sediment input (Fig. 4a), by
2050 the domain-average <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula> from the bathtub is about 2 times the
values of all the other simulations, increasing to more than 3 times by
2100. In the simulations with high sediment input (Fig. 4b), the accumulated
accretions of bathtub simulations are 2.5 and 4 times the values of the rest of the simulations for 2050 and 2100 respectively. The simulations with the HST simulations present different levels of attenuation and accordingly
different accretion levels. The lowest accretion corresponds to the highly attenuated case with embankment and culvert (Simulation 4), whereas the
highest accretion occurs in the case of the central channel (Simulation 3) that experiences increased drainage and thus less attenuation. The cases of
the tidal flat with no structures (Simulation 2) and of the embankment with the inner channel (Simulation 5) have intermediate levels of attenuation and
accretion.</p>
      <p id="d1e2759">All simulations show a strong elevation deficit (i.e. the difference between
the rate of sea-level rise and wetland accretion rate d<inline-formula><mml:math id="M157" display="inline"><mml:mi>E</mml:mi></mml:math></inline-formula>/d<inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, as none of the simulations predict that the tidal flat is capable of keeping pace with SLR. For the low-sediment conditions, by 2050 the elevation deficit of the
bathtub simulation is 5.5 <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, while the rest of the simulations predict
an elevation deficit of about 7 <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Over time, the elevation deficits
increase and by 2100 the bathtub predictions reach a value of 9.5 <inline-formula><mml:math id="M161" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and the HST simulations a value of 12 <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e2848">Increasing the sediment input concentration considerably changes the
accretion capacity of the tidal flat, particularly according to the bathtub
results. Bathtub simulations predict that the tidal flat is able to accrete
at a rate that almost matches the changes in sea level, so the wetland survives sea-level rise. Accretions for all other simulations are moderate,
with the simulations that have the central channel (Simulations 3 and 5)
responding more effectively to the increased sediment and accreting more
than the other<?pagebreak page777?> simulations (Simulations 2 and 4). Compared to the low
sediment conditions, elevation deficits of the bathtub predictions reduce to
3 and 5.5 <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> by 2050 and 2100 respectively, while in the other simulations those values increase to about 6 and 10 <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e2885">The structures included in the simulations have a clear effect on the
average <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula>. The inner channel promotes accretion further inland, as
it conveys more water and sediment to those areas away from the tidal input.
Compared to the tidal flat free of structures (Simulation 2), the inclusion of the channel (Simulation 3) is responsible for an increase in wetland-accumulated accretion of about 50 %. The opposite effect is observed when
the embankment with culvert is introduced, as it attenuates and reduces the
water and sediment flow into the upper part of the wetland. Comparing
results for the tidal flat without (Simulation 2) and with (Simulation 4)
embankment and culvert, we can observe a reduction in wetland-accumulated accretion of 25 %. The introduction of a drainage channel together with
the embankment and culvert (Simulation 5) represents an intermediate
situation in which the increased flushing effect of the channel and the
attenuating effect of the embankment and culvert partially compensate.</p>
      <p id="d1e2898">In Fig. 4a we have also included the average accumulated accretion for the
entire wetland site (Area E in Fig. 1b) using information from Rodriguez et
al. (2017) and Sandi et al. (2018). Rodriguez et al. (2017) applied a
similar EGM formulation to Area E (Fig. 1c) to assess the effect of
attenuation on wetland evolution under SLR considering typical (37 <inline-formula><mml:math id="M166" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and increased (111 <inline-formula><mml:math id="M167" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) sediment conditions. Sandi et al.
(2018) further studied the effects of tidal restrictions at the wetland inlet
considering typical sediment loads. The values included in the figure
correspond to average accumulated accretion over the entire wetland at 2050
and 2100 for low sediment load with and without tidal restrictions (Fig. 4a)
and for high sediment load without<?pagebreak page778?> restrictions (Fig. 4b). The figures show that the simulations without tidal restrictions result in values of
accumulated accretion similar to the simulation with low attenuation
(Simulations 3 and 5) for both low and high sediment loads, while
predictions of accumulated accretion including tidal restrictions are closer
to the simulation with high attenuation (Simulations 2 and 4).</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Changes in vegetation</title>
      <p id="d1e2943">The interactions between sea-level rise, accretion and vegetation changes
are complex because vegetation not only responds to vertical elevation
changes, but also migrates inland. In order to obtain a clear picture of the vegetation changes over time, we simplified two-dimensional vegetation maps
(i.e. Fig. 2) into a one-dimensional representation. The vegetation type at a given distance from the tidal input was determined by selecting the
predominant (higher occurrence) vegetation in the transverse direction. Figure 5 shows snapshots of the predominant vegetation every 20 years. As already
explained, in the simulations with embankment and culvert (Simulations 4 and
5), the structures are located at 310 <inline-formula><mml:math id="M168" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from the tidal input. The conditions
at the beginning of the simulation (Fig. 5a) for Simulations 1, 2 and 3 show mangrove occupying approximately the lower 400 <inline-formula><mml:math id="M169" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> of the tidal flat and saltmarsh the next 200 <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> upland. For Simulations 4 and 5 the presence of the embankment reduces hydroperiods in the upper areas, constraining mangrove to
the lower 310 <inline-formula><mml:math id="M171" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. The embankment also limits the extent of inundation in the
upper areas, reducing the extent of the saltmarsh to about 100 <inline-formula><mml:math id="M172" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from the
embankment.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e2988">Predominant position occupied by each vegetation type in the tidal flat from 2000 to 2100. Simulations for low sediment input, <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">SSC</mml:mi></mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">37</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mrow></mml:math></inline-formula>. Simulations: 1 Bathtub, 2 Free tidal flat, 3 Inner channel, 4 Embankment with culvert and 5 Embankment and inner channel.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021-f05.png"/>

        </fig>

      <p id="d1e3023">After 20 years (Fig. 5b) Simulations 1, 2 and 3 show mangrove encroachment on saltmarsh. The upstream mangrove edge moves up to 50 <inline-formula><mml:math id="M174" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>,
forcing saltmarsh occurrence in areas further than 300 <inline-formula><mml:math id="M175" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from the tide input
creek. In Simulations 4 and 5 the embankment halts mangrove migration and increases in inundation of upper areas promote saltmarsh increase. Overall,
wetland area increases due to mangrove expansion (Simulations 1, 2 and 3) or
to saltmarsh expansion (Simulations 4 and 5).</p>
      <p id="d1e3043">By 2040 (Fig. 5c), mangrove has encroached further on saltmarsh in
Simulations 1, 2 and 3, resulting in saltmarsh squeeze at the upper end due to the landward boundary of the computational domain. Simulations 4 and 5
show very minor encroachment of mangrove on saltmarsh, which is able to
migrate landward. Total wetland area remains approximately unchanged for
Simulations 1, 2 and 3, while it keeps increasing in Simulations 4 and 5. Some areas of mudflat start appearing in the HST simulations due to extended
hydroperiods.</p>
      <p id="d1e3046">Twenty years later, in 2060 (Fig. 5d), the MSL is about 30 <inline-formula><mml:math id="M176" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> higher than in
2000, and we can see considerable mudflat areas in all simulations except for the bathtub simulation (Simulation 1), which presents a uniform coverage of
mangrove over the entire domain. Saltmarsh is totally absent in Simulations 1, 2 and 3 due to mangrove encroachment but still remains almost unchanged
in Simulations 4 and 5. All simulations except the bathtub simulation show decreases<?pagebreak page779?> in wetland extent, mostly due to saltmarsh disappearance in
Simulations 2 and 3 and to mangrove squeeze in Simulations 4 and 5.</p>
      <p id="d1e3057">From 2080 on (Fig. 5e, f), a rapid retreat of the remaining wetland can be
observed in all simulations. The retreat occurs faster for the simulations
with the embankment, resulting in total wetland disappearance by 2100. The
rest of the simulations still show some remnant mangrove areas by 2100,
which are only significant (40 %) in the case of the bathtub simulations.</p>
      <p id="d1e3060">The same trend of increase in wetland area in the first 20 years of
simulation, followed by a continuous decrease starting at 40 years and
ending at 100 years with almost complete wetland disappearance under the
same sea-level rise trajectory, was observed by Rodriguez et al. (2017) and Sandi et al. (2018). Sandi et al. (2018) also reported larger wetland losses in their simulations with tidal input restrictions at the wetland inlet when
compared to the case without restrictions.</p>
      <p id="d1e3063">The same analysis of vegetation evolution for the high sediment input
scenario is presented in Fig. 6. With increased sediment, the patterns of
vegetation change remain remarkably similar to the patterns observed in Fig. 5 for the low sediment conditions, with the exception of the bathtub simulations (Simulation 1). Compared to Fig. 5, the bathtub results indicate that
saltmarsh is able to remain in the upper wetland areas for longer (until
2060) and that mangrove does not retreat, resulting in no wetland loss after
100 years of simulation. The other simulations without embankment (2 and 3)
show a slightly slower retreat of both mangrove and saltmarsh than in Fig. 5, while the simulations with the embankment show almost the same behaviour
as in the case of low sediment. Some of the simulations in Fig. 6 show<?pagebreak page780?> localised mangrove areas that tend to establish themselves and persist close to the
tidal creek.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e3069">Predominant position occupied by each vegetation type in the tidal flat from 2000 to 2100. Simulations for high sediment input, <inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:mtext>SSC</mml:mtext><mml:mo>=</mml:mo><mml:mn mathvariant="normal">111</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mrow></mml:math></inline-formula>. Simulations: 1 Bathtub, 2 Free tidal flat, 3 Inner channel, 4 Embankment with culvert and 5 Embankment and inner channel.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021-f06.png"/>

        </fig>

      <p id="d1e3103">For a more detailed analysis, we can look at the vegetation evolution in terms of wetland area (mangrove and saltmarsh), wetland retreat (position of
the seaward edge) and wetland transgression (position of the landward edge).</p>
      <p id="d1e3106">Figure 7a shows that the wetland extent predicted using the bathtub approach
(Simulation 1) is affected by the sediment load, with only the low sediment
condition resulting in a sharp decay in extent after 2060/70. The difference
in extent is due to the vegetation retreat in the low sediment case, which
does not occur in the high sediment case (Fig. 7b). Wetland extent values
for the HST simulations are not greatly affected by the sediment load, and
they are much smaller than the values predicted by the bathtub (Fig. 7a).
Wetland retreat starts first in the simulations without the channel
(Simulations 2 and 4) and about 20 years later in the simulations with the channel (Simulations 3 and 5) due to increased drainage. Once the retreat
starts, it occurs faster in the simulations with the embankment (Simulations
4 and 5) that delays the ebb flows and increases hydroperiods in the lower
wetland areas.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e3111">Time evolution of wetland in low (<inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mtext>SSC</mml:mtext><mml:mo>=</mml:mo><mml:mn mathvariant="normal">37</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mrow></mml:math></inline-formula>) and high (<inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:mtext>SSC</mml:mtext><mml:mo>=</mml:mo><mml:mn mathvariant="normal">111</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mrow></mml:math></inline-formula>) sediment environments under SLR. <bold>(a)</bold> Wetland area; <bold>(b)</bold>; wetland retreat; and <bold>(c)</bold> wetland transgression.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/25/769/2021/hess-25-769-2021-f07.png"/>

        </fig>

      <p id="d1e3179">Wetland transgression is not affected by the sediment conditions (Fig. 7c)
because of the limited amount of sediment that reaches the upper wetland
areas. Transgression starts later in the simulations with the embankment
(Simulations 4 and 5) because of the reduced depths and sediment loads in
the upper wetland areas. The presence of the channel (Simulations 3 and 5)
results in earlier but more gradual transgression compared to setups with no
drainage structure (Simulations 2 and 4).</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Discussion</title>
      <p id="d1e3191">The interactions between all the processes related to the dynamics of coastal wetlands are quite complex (Fagherazzi et al., 2012; Reef et al., 2018; Saintilan et al., 2014), which makes the
bathtub assumption limited for most applications. Places with multiple vegetation species (Cahoon et
al., 2011; Rogers et al., 2006) and an intertwined channel network (D'Alpaos, 2011) present a strong
heterogeneity of saltwater exposure and sediment delivery to the overbank areas that need a detailed
description of flow and sediment processes (see also Coleman et al., 2020). Artificial structures constraining
flow and sediment modify accretion rates (Bellafiore et al., 2014; Cahoon et al., 2011) and thus
wetland evolution (Rodriguez et al., 2017; Sandi et al., 2018). Even though our simulation design
focused on simplified setups, these setups comprise typical wetland features and include most of the
complex processes and interactions.</p>
      <p id="d1e3194">Our results indicate that wetlands do not cope with SLR for the simulated conditions corresponding
to a high-emission climate change scenario. This result was not surprising for the low sediment situation, as the inability of sediment-poor coastal wetlands to survive high levels of SLR due to
low accretion rates has been reported before (Kirwan et al., 2010; Lovelock et al., 2015b; Rodriguez
et al., 2017; Sandi et al., 2018; Schuerch et al., 2018).  However, the results for high sediment
load seem to challenge some previous studies highlighting the potential of biophysical feedbacks to
produce accretion rates comparable to SLR (D'Alpaos et al., 2007; Kirwan and Murray, 2007; Kirwan et
al., 2016b; Mudd et al., 2009; Temmerman et al., 2003). In our case, the biophysical feedbacks with
a high sediment load produced wetland accretion rates similar to SLR rates only for the bathtub
simulation.</p>
      <p id="d1e3197">Analysis of accretion rates indicates that all simulations start with similar rates in the vegetated areas, with about 2.5 and 7.5 <inline-formula><mml:math id="M180" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in the low
and high sediment situations respectively. For the low sediment case, the initial value compared very well with historic values for south-eastern Australian conditions measured by Howe et al. (2009) and Rogers et al. (2006). For the
high sediment case, an increase in the accretion value by a factor of 3 seems reasonable considering an increase in the sediment load by a factor of 3 (from 37 to 111 <inline-formula><mml:math id="M181" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Those starting values of accretion remain at approximately the same level over most of the time for
the bathtub simulations, while they decrease for the HST simulations. The
decrease is more marked for Simulations 2 and 4 (which reach a value of about 1 to 1.5 <inline-formula><mml:math id="M182" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> by 2050) than for the simulations with inner channel Simulations 3 and 5 (which attain values of 2  and 4 <inline-formula><mml:math id="M183" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> by 2050 for
low and high sediment conditions respectively). The reduction of the magnitude of the biophysical feedbacks over time is due to the continuous
upland migration of vegetation, which colonises upper areas with
comparatively less water depth and sediment supply (see also Sandi et al.,
2018). The bathtub model predicts less migration and higher depths, so it
consistently overestimates accretion rates.</p>
      <p id="d1e3268">Despite having reduced accretion rates when compared to the bathtub
simulations, the HST simulations still show a noticeable difference in
elevation gains depending on the sediment supply levels. Compared to the low
sediment case, the high sediment supply case results in about twice the
average accumulated accretion (Fig. 4). However, analysis of vegetation
changes over time for low (Fig. 5) and high (Fig. 6) sediment loads reveals minimum differences between them. Analysis of Fig. 7 shows that even
though the increase in sediment load generates about twice the accretion,
this extra elevation is not sufficient to prevent wetland submergence. Figure 4 suggests that accretion rates of 4 times the historic values or more are needed for the wetlands to be able to cope with SLR.</p>
      <p id="d1e3272">Although the simulations carried out in this study were conducted on
simplified domains, they can capture the general response of more complex domains present in real wetlands, as shown by the comparison with entire
wetland results from Rodriguez et al. (2017) and Sandi et al. (2018) in Fig. 4. Moreover, the features included are present in many coastal areas around
the world and thus have wider<?pagebreak page781?> implications. Our bathtub results for low
sediment conditions predicting an initial increase in wetland extent early
in the century and then a decrease after 2060 agree with previous bathtub
model predictions (Lovelock et al., 2015b; Rogers et al., 2012; Schuerch et
al., 2018). However, using the HST framework, our predictions indicate that the decrease may start as early as 2030 for wetlands with a tidal range close
to 1.3 <inline-formula><mml:math id="M184" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (as represented in our study), over a wide range of sediment loads.
We can expect that this accelerated wetland loss will affect many parts of
the world, particularly in areas with micro to meso tidal ranges and heavily developed coasts, like eastern Australia (Williams and Watford, 1997), parts
of the eastern US (Crain et al., 2009), the western US (Thorne et al., 2018), eastern China (Tian et al., 2016) and western Europe (Gibson et al., 2007). In these
environments, attenuation can be important due to manmade structures, and transgression may be limited by development (Doody, 2013; Geselbracht et al.,
2015; Kirwan and Megonigal, 2013), so we can expect a behaviour closer to
that of Simulations 4 and 5. On the other hand, wetlands with dense drainage networks like the Venice Lagoon in Italy (Silvestri et al., 2005), the
Scheldt estuary in the Netherlands (Temmerman et al., 2012), and the North Inlet in South Carolina, US (Morris et al., 2005), would probably behave similarly to Simulation 3 and experience comparatively smaller losses of area.</p>
      <p id="d1e3283">The results presented in this study show generalised conditions of wetland dynamics under sea-level rise by using several simplified domains that focus
on individual mechanisms affecting ecogeomorphic evolution. This approach
can support a broader perspective of the potential fate of coastal wetlands in general, but some limitations arise as part of the model assumptions. As
with most wetland evolution models, we did not consider soil processes other
than accretion, disregarding swelling, compaction and deep<?pagebreak page782?> subsidence.
Measurements in wetlands of the Hunter estuary show that long-term surface elevation changes are mostly due to accretion, supporting our assumption
(Howe et al., 2009; Rogers et al., 2006). Another process that we did not
consider was the effects of marsh edge retreat due to ocean or wind waves
(Carniello et al., 2012; Fagherazzi et al., 2012), which can have a
significant role in coastal wetland evolution. Most coastal wetlands in
Australia are estuarine and not exposed to ocean waves, whereas wind effects
in our wetland were not important due to the absence of large open water
areas where wind waves could fully develop. We also simplified the tidal
signal without including neap–spring cycles, which sped up computations but which may have affected the results. However, preliminary tests including
neap–spring tide variability showed only small differences in the initial landward edge of saltmarsh, which did not affect the accretion dynamics due
to the small depths and low sediment availability in that area. Finally, our
simulations did not include the effect of storms, which can influence
sediment availability, water depths and velocities. We believe that in our
case excluding storm effects is justifiable based on Rogers et al. (2013),
who found that in these fine sediment environments storms affect accretion
dynamics over the short term (immediate erosion or low accretion followed by
increased deposition over the next months), but they do not change the
long-term trend of accretion and elevation gain rates.</p>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e3295">We conducted detailed numerical simulations on the response to SLR of four
different typical coastal wetland settings, including the case of a vegetated tidal flat free from obstructions and drainage features and three
other settings that included an inner channel, an embankment with a culvert,
and a combination of inner channel, embankment and culvert. We also included
a simulation using a simple bathtub approach, in which none of the features
(vegetation,<?pagebreak page783?> channels, culverts) are considered. We used conditions typical
of south-eastern Australia in terms of vegetation, tidal range and sediment load, but we also analysed simulations with an increased sediment load to assess the
potential of biophysical feedbacks to enhance accretion rates.</p>
      <p id="d1e3298">We found that the distinct patterns of flow and sediment redistribution
obtained from these simulations result in increased wetland vulnerability to
SLR when compared to predictions using the simple bathtub approach. Changes
in elevation due to accretion were between 10 % and 50 % of those
obtained from bathtub predictions, and wetland retreat and reduction of
wetland extent started 20 to 40 years earlier than for the case of the
bathtub simulations, depending on wetland setting. Transgression for all
settings was delayed with respect to the bathtub predictions and was limited
by the presence of a hard barrier at the upland end.</p>
      <p id="d1e3301">The simulations using the full hydrodynamic and sediment transport dynamic
models indicated that wetlands with good drainage (e.g. including an inner
channel) were more resilient to SLR, displaying more accretion, a later
retreat and reduction of wetland area and an increased transgression when
compared with wetlands with strong flow impediments (e.g. including an
embankment).</p>
      <p id="d1e3304">Increasing the sediment load delivered to the wetlands by a factor of 3 increased the accretion of all wetland settings by a factor of 2. However,
this extra elevation was not enough to prevent wetland submergence, as
predictions of wetland evolution were very similar for low and high sediment
conditions. Based on our results, we estimate that accretion rates of 4 times the typical historic values or more would be needed for these wetlands
to cope with SLR.</p>
      <p id="d1e3308">Even though the characteristics of the wetlands studied here correspond
mainly to south-eastern Australian conditions, our results have a wider relevance because they clearly link the capacity of wetlands to accrete and migrate
upland, the two mechanisms by which wetlands can gain elevation and keep up
with SLR. Failure to consider the spatial coevolving nature of flow,
sediment, vegetation and topographic features can result in overestimation
of wetland resilience. Our results reconcile the wide discrepancy between
upper thresholds of wetland resilience to sea-level rise in previous
modelling studies with those emerging from paleo-stratigraphic observations.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e3315">The hydrodynamic model and simulation results are available from the
corresponding authors on request.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e3318">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/hess-25-769-2021-supplement" xlink:title="pdf">https://doi.org/10.5194/hess-25-769-2021-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e3327">AB, PMS and JFR designed the study. AB calibrated and fitted the
models and ran the simulations. AB, JFR, PMS, SGS, GR and NS analysed the results. AB, PMS and JFR wrote the paper with
substantial input from all the co-authors.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e3333">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e3339">Patricia M. Saco is grateful for support from the Australian Research Council (grant no. FT140100610). Angelo Breda was supported by a University of Newcastle PhD
scholarship.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e3344">This research has been supported by the Australian Research Council (grant no. FT140100610) and the University of Newcastle Australia (PhD scholarship).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e3350">This paper was edited by Nadia Ursino and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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    <!--<article-title-html>Accretion, retreat and transgression of coastal wetlands experiencing sea-level rise</article-title-html>
<abstract-html><p>The vulnerability of coastal wetlands to future sea-level
rise (SLR) has been extensively studied in recent years, and models of
coastal wetland evolution have been developed to assess and quantify the
expected impacts. Coastal wetlands respond to SLR by vertical accretion and
landward migration. Wetlands accrete due to their capacity to trap sediments
and to incorporate dead leaves, branches, stems and roots into the soil, and they migrate driven by the preferred inundation conditions in terms of
salinity and oxygen availability. Accretion and migration strongly interact, and they both depend on water flow and sediment distribution within the
wetland, so wetlands under the same external flow and sediment forcing but
with different configurations will respond differently to SLR. Analyses of
wetland response to SLR that do not incorporate realistic consideration of
flow and sediment distribution, like the bathtub approach, are likely to
result in poor estimates of wetland resilience. Here, we investigate how
accretion and migration processes affect wetland response to SLR using a
computational framework that includes all relevant hydrodynamic and sediment
transport mechanisms that affect vegetation and landscape dynamics, and it
is efficient enough computationally to allow the simulation of long time
periods. Our framework incorporates two vegetation species, mangrove and
saltmarsh, and accounts for the effects of natural and manmade features like
inner channels, embankments and flow constrictions due to culverts. We apply
our model to simplified domains that represent four different settings found
in coastal wetlands, including a case of a tidal flat free from obstructions
or drainage features and three other cases incorporating an inner channel,
an embankment with a culvert, and a combination of inner channel, embankment
and culvert. We use conditions typical of south-eastern Australia in terms of vegetation, tidal range and sediment load, but we also analyse situations
with 3 times the sediment load to assess the potential of biophysical feedbacks to produce increased accretion rates. We find that all wetland
settings are unable to cope with SLR and disappear by the end of the
century, even for the case of increased sediment load. Wetlands with good
drainage that improves tidal flushing are more resilient than wetlands with
obstacles that result in tidal attenuation and can delay wetland submergence by 20 years. Results from a bathtub model reveal systematic
overprediction of wetland resilience to SLR: by the end of the century, half
of the wetland survives with a typical sediment load, while the entire
wetland survives with increased sediment load.</p></abstract-html>
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