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  <front>
    <journal-meta><journal-id journal-id-type="publisher">HESS</journal-id><journal-title-group>
    <journal-title>Hydrology and Earth System Sciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">HESS</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Hydrol. Earth Syst. Sci.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1607-7938</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/hess-23-2813-2019</article-id><title-group><article-title>Lidar-based approaches for estimating solar <?xmltex \hack{\break}?> insolation in heavily forested streams</article-title><alt-title>Lidar-based approaches for estimating solar insolation in heavily forested streams</alt-title>
      </title-group><?xmltex \runningtitle{Lidar-based approaches for estimating solar insolation in heavily forested streams}?><?xmltex \runningauthor{J.~J.~Richardson et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Richardson</surname><given-names>Jeffrey J.</given-names></name>
          <email>jrichardson@sterlingcollege.edu</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Torgersen</surname><given-names>Christian E.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8325-2737</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Moskal</surname><given-names>L. Monika</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1563-6506</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Sterling College, Craftsbury Common, VT, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>US Geological Survey, Forest and Rangeland Ecosystem Science Center, Cascadia Field Station, <?xmltex \hack{\break}?> University of Washington, Seattle, WA, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Precision Forestry Cooperative, School of Environmental and Forest Science, University of Washington, Seattle, WA, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Jeffrey J. Richardson (jrichardson@sterlingcollege.edu)</corresp></author-notes><pub-date><day>5</day><month>July</month><year>2019</year></pub-date>
      
      <volume>23</volume>
      <issue>7</issue>
      <fpage>2813</fpage><lpage>2822</lpage>
      <history>
        <date date-type="received"><day>12</day><month>September</month><year>2018</year></date>
           <date date-type="rev-request"><day>18</day><month>February</month><year>2019</year></date>
           <date date-type="rev-recd"><day>19</day><month>May</month><year>2019</year></date>
           <date date-type="accepted"><day>21</day><month>June</month><year>2019</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2019 Jeffrey J. Richardson et al.</copyright-statement>
        <copyright-year>2019</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019.html">This article is available from https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019.html</self-uri><self-uri xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019.pdf">The full text article is available as a PDF file from https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e115">Methods to quantify solar insolation in riparian landscapes are needed due
to the importance of stream temperature to aquatic biota. We have tested
three lidar predictors using two approaches developed for other applications
of estimating solar insolation from airborne lidar using field data
collected in a heavily forested narrow stream in western Oregon, USA. We
show that a raster methodology based on the light penetration index (LPI)
and a synthetic hemispherical photograph approach both accurately predict
solar insolation, explaining more than 73 % of the variability observed in
pyranometers placed in the stream channel. We apply the LPI-based model to
predict solar insolation for an entire riparian system and demonstrate that
no field-based calibration is necessary to produce an unbiased prediction of
solar insolation using airborne lidar alone.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e127">Accurately quantifying solar insolation, defined as the amount of solar
radiation incident on a specific point on the Earth's surface for a given
period of time, is important to many fields of study such as solar energy,
glacier dynamics, and climate modeling. In this study, we focus on the
importance of solar insolation for ecological applications. In forested
ecosystems, trees interact with solar radiation through shading, and thus
solar insolation at fine spatial scales in these systems can vary widely.
Understanding the heterogeneous patterns of insolation below tree canopies
has been important for numerous applications, such as understanding the
importance of sun flecks for understory photosynthesis, gaining insight into
the patterns of seedling regeneration in dense forests (Nicotra et al., 1999), and explaining patterns of snowmelt (Hock, 2003) and soil moisture
(Breshears et al., 1997).</p>
      <p id="d1e130">The relationship between stream temperature and solar insolation is of
particular interest in this study, as high amounts of solar energy
irradiating a stream can cause adverse ecological effects due to directly
increasing the temperature of the streams. In northwestern North America,
a large amount of research has focused on the relationship between forest
practices, stream temperature, and the corresponding effect on river
salmonid fishes (Holtby, 1988; Leinenbach et al., 2013; Moore et al.,
2005a, b). Direct measurement of stream temperature with
in-stream thermographs can be used to quantify thermal diversity
(Torgersen et al., 2007, 2012),
but ground-based measurements are time consuming, expensive, and impractical
for large areas. In addition, stream temperature measurements can only show
the effect of forest management practices if taken before and after trees
are removed. In order to predict the potential effect of forest management
practices on stream temperature, models are often employed to estimate the
amount of solar insolation irradiating streams using remotely sensed data
(Forney et al., 2013).</p>
      <p id="d1e133">Several different methods have been utilized for measuring or predicting
solar insolation on the ground. Pyranometers are the most direct method for
measuring insolation, capturing the solar radiation flux density above a
hemisphere as an electrical signal and cataloguing those signals in a
datalogger (Kerr et al., 1967). Once calibrated, these
signals give a<?pagebreak page2814?> measure of the total direct and diffuse solar radiation
irradiating a point for a given period of time (Bode et al., 2014; Forney
et al., 2013; Musselman et al., 2015). While pyranometers give direct
measurement of solar insolation for a defined period of time, hemispherical
photographs allow indirect estimation of solar insolation for any point in
time (Bode et al., 2014; Breshears et al., 1997; Rich et al., 1994).
Plotting the path of the sun in the area of sky captured by the
hemispherical photograph allows for calculation of direct solar radiation
through identified canopy gaps, while gap fraction across the entire
hemisphere allows for calculation of diffuse radiation. Analysis of
hemispherical photographs requires assumptions of extra-terrestrial solar
radiation and sky conditions in order to produce solar insolation estimates.
Understory light conditions can also be modeled by creating a
three-dimensional reconstruction of a forest from field-based biophysical
measurements (Ameztegui et al., 2012) or terrestrial laser scanning
(Ni-Meister et al., 2008). Ground-based measurements are limited
by the time and cost required to collect data, and thus solar insolation can
only be calculated for relatively small spatial extents.</p>
      <p id="d1e136">Airborne and satellite remote sensing methods provide a means for estimating
solar insolation over large spatial extents. Satellite-based methods
utilizing passive remote sensing data can provide coarse-scale estimates of
solar radiation absorbed by tree canopies through radiative transfer models
based on spectral indices (Field et al., 1995; Asrar et al., 1992), but
these methods are not suitable for fine-scale application such as modeling
stream temperature. Airborne lidar is the preferred method for
characterizing three-dimensional structure of forest canopies and thus is
also used to assess the shading effect of those canopies. Below we discuss
three different approaches that have been used in previous studies to
quantify solar insolation at ground level using aerial lidar.</p>
<sec id="Ch1.S1.SS1">
  <label>1.1</label><title>Raster approaches</title>
      <p id="d1e147">Lidar data can be used to create raster datasets by selecting various
attributes of lidar points within a defined spatial neighborhood around a
raster cell. One of the most common raster products for assessing canopy
structure is the light penetration index (LPI), the ratio of ground first
return points (typically less than 2 m in elevation above ground) to the
total number of lidar first return points within a given raster cell. This
ratio has been shown to be useful for characterizing light extinction in
canopies according to the Beer–Lambert law (Richardson et al., 2009) and
thus has been explored as a predictor of understory light conditions
(Musselman et al., 2013; Alexander et al., 2013; Bode et al., 2014). Solar
radiation calculators in GIS software can also be used to compute solar
insolation on a lidar-derived digital elevation model (DEM). Bode et al. (2014) combined an r.sun solar insolation model for the GRASS GIS software
based on a DEM with LPI to produce estimates of ground-level solar
insolation that showed high accuracy compared to pyranometer-collected field
data in a mixed forest in northern California, USA.</p>
</sec>
<sec id="Ch1.S1.SS2">
  <label>1.2</label><title>Lidar point reprojection</title>
      <p id="d1e158">Lidar point returns can be reprojected from the <inline-formula><mml:math id="M1" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M2" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M3" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> Cartesian coordinate
system in which they are most often delivered by a vendor into a spherical
coordinate system which centers the point cloud around a specific location
on the ground. This reprojection allows for a circular graph of the lidar
point returns to be created around a point at ground level. Alexander et al. (2013) created a canopy closure metric from these projected point graphs
based on gap fraction and found that this metric was correlated to
Ellenburg indicator values (which relate plants to their ecological niche
along an environmental gradient) of understory light availability. Moeser et
al. (2014) created synthetic hemispherical photographs from reprojected
lidar returns, and solar irradiance at ground level was calculated using
traditional hemispherical photograph analysis software. The processed
synthetic hemispherical photographs showed good correlation to pyranometer
measured solar irradiance at three field sites in eastern Switzerland.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e184">Study area in northwestern Oregon (USA). The grey polygon is the extent of the 2015 lidar acquisition. The black circles surrounded by white circles represent the 19 point locations. The letters A–D denote the four transects. The inset shows transect D and the background raster in the inset is the lidar-derived canopy height model with green representing tall trees and purple representing the lowest heights. The direction of flow is from west to east.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f01.png"/>

        </fig>

</sec>
<sec id="Ch1.S1.SS3">
  <label>1.3</label><title>Point cloud approaches</title>
      <p id="d1e201">Because lidar point clouds are typically represented in a three-dimensional
Cartesian coordinate system, it is possible to model the sun's position in
relation to that three-dimensional space. The number of lidar returns that
are reflected from a defined volume between the direction of the sun and the
ground can then be calculated. These methods are computationally intensive,
but have shown promise for providing the most direct measure of understory
light availability. Lee et al. (2008) calculated the number of points
within a conical field of view directed at the sun's location and created a
model to relate this to ceptometer measurements of photosynthetically active
understory solar radiation at specific times and locations in a pine forest
in northern Florida, USA. This method is limited by its reliance on raw
lidar point counts specific to the actual and relative point densities
within their lidar acquisition. Raw point counts are affected by both
changes in flight characteristics between missions and the patterns of
flight line overlap within a mission. A different point cloud approach
involves a linear tracing of the sun's rays along their path to the ground,
and Martens et al. (2000) demonstrated how a ray-tracing
algorithm could be used to characterize understory light conditions in a
computer-simulated forest. Peng et al. (2014) combined a lidar-based ray
tracing algorithm with field-collected canopy base heights to produce an
estimate of understory solar insolation based on the Beer–Lambert law that
compared well to field-collected pyranometer data but is limited in
practical application because of its reliance on field-measured data in its
model. Musselman et al. (2013) used a<?pagebreak page2815?> ray-tracing algorithm to produce
highly detailed estimates of direct beam solar transmittance in 5-minute
increments by voxelizing the lidar data and summing the number of voxels
that a ray intercepted between the point of origin and the sun. The
algorithm relied on site-specific pyranometer measurements to calibrate and
adjust the beam transmittance, and therefore we were restricted from testing
this method in this study.</p>
      <p id="d1e204">Our objectives were to test the accuracy and precision of established
methods of quantifying solar insolation from aerial lidar within areas of
narrow, heavily forested streams. We utilized two raster approaches and one
lidar point reprojection approach, three methodologies that had not been
previously applied and tested using high-quality field data collected in
heavily forested streams. We evaluated the three methodologies using simple
linear regressions that compared lidar-derived metrics to field-based
pyranometer measurements of solar insolation and hemispherical
photograph-based measures of shade in western Oregon, USA. Further, we
sought to apply this method to quantify solar insolation throughout a small
headwater stream network.</p>
</sec>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Study site</title>
      <p id="d1e223">All field locations were located within the wetted channel of Panther Creek
and a tributary (Fig. 1) in narrow streams (1–6 m in width) located in the
east side of the Coast Range of Oregon, USA, within a larger research area in
which lidar has been used to quantify forest canopy structure
(Flewelling and McFadden, 2011). All field sites were within a mature
Douglas fir (<italic>Pseudotsuga menziesii</italic>) forest, with other dominant trees including red alder (<italic>Alnus rubra</italic>),
western red-cedar (<italic>Thuja plicata</italic>), and western hemlock (<italic>Tsuga heterophylla</italic>). The elevation profile and
description of the stream can be found in Richardson and
Moskal (2014). The center of the channel was manually digitized as a
polyline in ArcGIS using a combination of aerial imagery and the
vendor-provided lidar DEM.</p>
      <p id="d1e238">Four transects were installed in late June 2015 using a Leica Builder Total
Station and georeferenced using a Javad Maxor GPS unit. The locations of the
transects can be seen in Fig. 1, with the 19 point locations used for
capturing field data denoted by black dots surrounded by white circles
(A contains 3 points, B and C contain 4 points, and D contains 8 points).
Transect locations were chosen manually in order to maximize variability in
forest shade while allowing for safe access by the field crew. Each point
location was<?pagebreak page2816?> located within the stream channel and marked by driving rebar
into the substrate until only 1 m was exposed above the water surface. Point
locations were approximately 15 m apart within a transect in order to allow
data from multiple point locations to be collected by a single datalogger.</p>
      <p id="d1e241">Two datasets were collected at each point location during the last 2 weeks
of June in 2015. A hemispherical photograph was collected using a Nikon
CoolPix 4500 digital camera leveled on a tripod 1 m above the ground under
uniform sky conditions (Fig. 2) utilizing a method to find the optimum
light exposure (Zhang et al., 2005). Each hemispherical photograph
was analyzed using the Gap Light Analyzer (GLA) program (Frazer
et al., 1999) in order to produce estimates of percent transmittance for
diffuse and direct sunlight. An Apogee Instruments SP-110 self-powered
silicon-cell pyranometer, leveled and mounted to the rebar pole at 1 m
height (Fig. 3), was used to collect a full day's solar output at each
point location using the datalogger. The raw voltage values collected by the
datalogger were calibrated to solar irradiance using the closest publicly
available meteorological data. All pyranometer datasets were collected on
cloudless days, except for transect A, and pyranometer data from transect A
were not used in this study. The calibrated pyranometer data from a point
location from transect D are shown in Fig. 4. Note that the silicon-cell
photodiodes, such as the SP-110 can, produce erroneous readings under
conifer canopies. A black body thermopile pyranometer would have been more
appropriate for this study but was not available to the authors.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e247">Example of hemispherical photograph acquisition at a plot location in transect D.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f02.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e258">Example of pyranometer installation at transect D (note that pyranometer is mounted on south side of pole at a height of 1 m).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f03.jpg"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e269">Daily pyranometer output from sunset to sundown for a plot in Transect D.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Lidar data and analysis</title>
      <p id="d1e286">Airborne discrete-return lidar was acquired in June of 2015 according to the
specifications described in Table 1. The vendor provided processed discrete
lidar point returns as well as a lidar DEM and highest hit model at a pixel
resolution of 1 m. The highest hit model was subtracted from the DEM to
create a canopy height model (CHM) describing the vegetation height
normalized to the ground surface. In addition, FUSION (McGaughey,
2009) was used to subtract the elevations of the raw lidar points from the
ground elevation in the DEM to produce a normalized point cloud dataset (NPCD). Note that the perspective of the lidar analyses is in reference to
ground height while the field data were collected at 1 m above the ground.
While this is a small difference, it could<?pagebreak page2817?> be a source of error in
comparisons, especially at low solar angles.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e292">Lidar data specifications.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Acquisition date</oasis:entry>
         <oasis:entry colname="col2">18 June 2015</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Sensor</oasis:entry>
         <oasis:entry colname="col2">Leica ALS80</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Survey altitude</oasis:entry>
         <oasis:entry colname="col2">1400 m</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Pulse rate</oasis:entry>
         <oasis:entry colname="col2">394.8 kHz</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Field of view</oasis:entry>
         <oasis:entry colname="col2">30<inline-formula><mml:math id="M4" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mean pulse density</oasis:entry>
         <oasis:entry colname="col2">25.35 pulses per square meter</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Overlap</oasis:entry>
         <oasis:entry colname="col2">100 % with 65 % side lap</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Relative accuracy</oasis:entry>
         <oasis:entry colname="col2">4 cm</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Vertical accuracy</oasis:entry>
         <oasis:entry colname="col2">5 cm</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e397">LPI was computed as follows:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M5" display="block"><mml:mrow><mml:mi mathvariant="normal">LPI</mml:mi><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi>g</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          LPI was computed in ArcGIS using a circular buffer with radius 10 m around each
field point location mirroring the radius used in Richardson et al. (2009). LPI was also computed using a shifted square buffer modified from
the method of Bode et al. (2014) where the buffer side length (<inline-formula><mml:math id="M6" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula>) was
calculated based on the following:
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M7" display="block"><mml:mrow><mml:mi>s</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>h</mml:mi><mml:mrow><mml:mi>tan⁡</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M8" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula> is equal to the modal tree height across all our plots (34 m), and
<inline-formula><mml:math id="M9" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> is equal to the maximum lidar scan angle subtracted from
90<inline-formula><mml:math id="M10" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (75<inline-formula><mml:math id="M11" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>), resulting in a buffer side length of 9.12 m.
The square buffer was shifted south to account for the seasonal solar angle
in the Northern Hemisphere according to the following:
            <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M12" display="block"><mml:mrow><mml:mi mathvariant="normal">shift</mml:mi><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>s</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi>cos⁡</mml:mi><mml:mi mathvariant="italic">σ</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>-</mml:mo><mml:mi>s</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M13" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> is equivalent to the solar angle at noon on the date of
interest. A solar angle of 68<inline-formula><mml:math id="M14" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> was used in this study, resulting
in a southern shift of 3.42 m. The buffer tool, zonal statistics tool, and
move command were used to achieve the shift in ArcGIS. We also computed
topographically influenced solar radiation using the lidar DEM and the solar
radiation function in ArcGIS, but found that there was no significant
difference across the plot locations and thus did not use these results in
subsequent analysis.</p>
      <p id="d1e534">Synthetic hemiphotos were created in MATLAB using the method of Moeser et
al. (2014) and analyzed for diffuse and direct light transmittance in
GLA. All statistical analyses were performed in R (version 3.4).</p>
      <p id="d1e537">Longitudinal profiles of stream shading were created in ArcGIS in 1 m
increments based on the intersections of the stream polyline center line with
the raster output of modeled solar insolation.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Comparison between pyranometers and hemispherical photographs</title>
      <p id="d1e557">Figure 5 shows the correlation between field-collected pyranometer data and
processed hemispherical photographs, with data from transect A removed.
These data are highly correlated (<inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.87</mml:mn></mml:mrow></mml:math></inline-formula>), but these data are also
not equally distributed across a range of solar insolation. Many more plot
locations were at low levels of solar insolation than in areas of relatively
low shade. This is very typical of the heavily forested streams in
northwestern North America. Note that none of our plot locations contained
transmittance greater than 40 %.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><?xmltex \currentcnt{5}?><label>Figure 5</label><caption><p id="d1e577">Comparison between pyranometer-measured solar insolation and daily diffuse and direct radiation canopy transmittance calculated from hemispherical photographs.</p></caption>
          <?xmltex \igopts{width=170.716535pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f05.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Linear regressions</title>
      <p id="d1e594">Pyranometer-based solar insolation and hemispherical photograph percent
diffuse and direct radiation transmittance calculated at all point locations
except transect A were compared to three lidar predictors using simple
linear regression. These results are shown in Fig. 6. The LPI calculated
using a 10 m circle centered on the point location explained about 55 % of
the variability in both response variables, but the prediction accuracy
improved when LPI was calculated using the shifted square buffer. Shifted
LPI explained 74 % of the variability in solar insolation and 64 % of
the variability in percent transmittance. Synthetic hemispherical
photographs explained 77 % of the variability in solar insolation and
60 % of the variability in percent transmittance. Figure 6 shows
comparisons between transects B and D to make interpretation easier, but
Table 2 shows the results of linear regressions between predicted variables
and hemispherical photograph transmittance for all plot locations resulting
in small reductions in the amount of variability explained. Table 3 gives
parameters of slope and intercept resulting from the simple linear
regression.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><label>Figure 6</label><caption><p id="d1e599">Simple linear regressions between lidar predictor variables and field-measured pyranometer solar insolation <bold>(a, c, e)</bold> and hemispherical photograph percentage transmittance <bold>(b, d, f)</bold> omitting data from transect A.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f06.png"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e617">Coefficients of determination for the simple linear regression between predictor variables and hemispherical photograph transmittance using three additional point locations from transect A.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.90}[.90]?><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Predictor variable</oasis:entry>
         <oasis:entry colname="col2">Coefficient of</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">determination</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">(<inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Light penetration index</oasis:entry>
         <oasis:entry colname="col2">0.54</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Shifted light penetration index</oasis:entry>
         <oasis:entry colname="col2">0.54</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Synthetic hemispherical photograph % transmittance</oasis:entry>
         <oasis:entry colname="col2">0.45</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3"><?xmltex \currentcnt{3}?><label>Table 3</label><caption><p id="d1e702">Parameters from simple linear regressions. Note that all regressions are significant (<inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>). Data from transect A are excluded.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.93}[.93]?><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="center"/>
     <oasis:thead>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1">Response variable</oasis:entry>

         <oasis:entry colname="col2">Predictor variable</oasis:entry>

         <oasis:entry colname="col3">Slope</oasis:entry>

         <oasis:entry colname="col4">Intercept</oasis:entry>

       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>

         <oasis:entry colname="col1">Hemispherical</oasis:entry>

         <oasis:entry rowsep="1" colname="col2">Light penetration index</oasis:entry>

         <oasis:entry rowsep="1" colname="col3">124.09</oasis:entry>

         <oasis:entry rowsep="1" colname="col4"><inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3.29</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1">photograph %</oasis:entry>

         <oasis:entry colname="col2">Shifted light</oasis:entry>

         <oasis:entry rowsep="1" colname="col3" morerows="1">142.2</oasis:entry>

         <oasis:entry rowsep="1" colname="col4" morerows="1"><inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4.49</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1">transmittance</oasis:entry>

         <oasis:entry rowsep="1" colname="col2">penetration index</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">Synthetic hemispherical</oasis:entry>

         <oasis:entry rowsep="1" colname="col3" morerows="2">1.01</oasis:entry>

         <oasis:entry rowsep="1" colname="col4" morerows="2"><inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.32</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">photograph %</oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">transmittance</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1">Pyranometer</oasis:entry>

         <oasis:entry rowsep="1" colname="col2">Light penetration index</oasis:entry>

         <oasis:entry rowsep="1" colname="col3">6.73</oasis:entry>

         <oasis:entry rowsep="1" colname="col4"><inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.19</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1">insolation</oasis:entry>

         <oasis:entry colname="col2">Shifted light</oasis:entry>

         <oasis:entry rowsep="1" colname="col3" morerows="1">8.23</oasis:entry>

         <oasis:entry rowsep="1" colname="col4" morerows="1"><inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.30</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry rowsep="1" colname="col2">penetration index</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">Synthetic hemispherical</oasis:entry>

         <oasis:entry colname="col3" morerows="2">0.07</oasis:entry>

         <oasis:entry colname="col4" morerows="2"><inline-formula><mml:math id="M23" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.08</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">photograph %</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">transmittance</oasis:entry>

       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

      <?pagebreak page2818?><p id="d1e939"><?xmltex \hack{\newpage}?>While both the raster-based shifted LPI approach and the lidar point
reprojection synthetic hemispherical photograph approach explained more than
60 % of the variability in the field data, the limited range of solar
insolation conditions at the point locations in our study may limit some of
the conclusions that can be drawn. Excluding transect A, 14 of the 16 point
locations received less than 0.8 kWh m<inline-formula><mml:math id="M24" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M25" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, leading the other
two point locations to exert a large degree of leverage on the results. Note
that these two point locations received less than 35 % of the maximum
solar insolation. The three points in transect A all received less than
0.8 kWh m<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M27" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and their inclusion in Table 2 did not improve
coefficients of determination, suggesting that all methods are not as
effective at predicting field-measured values in areas of high canopy cover.
The constraints of the study design requiring point locations to be located
in the stream made it impossible to achieve a greater range in solar
insolation. It is reasonable to expect that including more point locations
receiving larger amounts of insolation would have led to improved accuracy
and greater coefficients of determination, as previous studies have shown
that accuracy increases as canopy cover decreases (Moeser et al.,
2014; Musselman et al., 2013; Richardson and Moskal, 2014).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><label>Figure 7</label><caption><p id="d1e993">Sun path superimposed on a synthetic hemispherical photograph <bold>(a)</bold> and a field-acquired hemispherical photograph <bold>(b)</bold> at a point location in Transect D. The letters represent the four cardinal directions.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f07.png"/>

        </fig>

      <?pagebreak page2819?><p id="d1e1008">One explanation of the decrease in variability at high canopy cover in
regressions E and F shown in figure is demonstrated in Fig. 7. Here, a
synthetic hemispherical photograph from transect D is compared to a
field-captured hemispherical photograph with the GLA modeled sun path
superimposed. This sun path is critical for determining the quantity of
direct light, but very small differences in the center location of the two
images can produce large differences in the modeled direct light. The
sun path passes through a modeled canopy gap near solar noon on the synthetic
hemispherical photograph, while it intersects only canopy and misses the gap
on the field-collected hemispherical photograph. Very small registration
errors can cause differences in transmittance at low light levels, and we
suggest that these errors are likely to cause the errors observed in the
regressions. The daily pyranometer output for the same point location is
shown in Fig. 8 to further aid comparison. The pyranometer is only briefly
exposed to full sunlight, highlighting the contribution of small gaps in the
canopy.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><?xmltex \currentcnt{8}?><label>Figure 8</label><caption><p id="d1e1013">Daily pyranometer output from sunset to sundown for the same plot as Fig. 7.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f08.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><?xmltex \currentcnt{9}?><label>Figure 9</label><caption><p id="d1e1025">Model used for generation of landscape-scale solar insolation estimates.</p></caption>
          <?xmltex \igopts{width=170.716535pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f09.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><label>Figure 10</label><caption><p id="d1e1036">Map of model-derived solar insolation for Panther Creek (top) and graph of model-derived solar insolation for reach A–C (middle) and reach B–D (bottom). Point E is a dammed reservoir. Note the direction of flow is toward point C.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f10.png"/>

        </fig>

      <p id="d1e1045">Understory vegetation is another likely cause of observed errors, as
airborne lidar is inherently limited in its ability to fully sample
multi-layered canopies (Richardson and<?pagebreak page2820?> Moskal, 2011). We noticed
several points with differences between lidar predictors and field data that
contained understory vegetation in close proximity to the field instruments.
The ideal scenario would be for the lidar scan angles to precisely match the
range of potential solar angles at each plot location, but this is currently
impractical, leading to an incomplete sample of the canopy light environment
which contributes to the observed errors.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Modeled solar insolation</title>
      <p id="d1e1056">The correlations between lidar predictors and field data were strongest in
Fig. 6c and e, and these lidar predictors are both appropriate
to use as the basis for estimating solar insolation across the study area.
Implementation of shifted LPI was the simplest and least time-intensive method,
and we chose to model solar radiation by multiplying shifted LPI by the maximum
above-canopy solar insolation for 20 June 2015 and then computing a
non-intercept linear regression (Fig. 9). Removing the intercept from the
model lowered the coefficient of determination but provided a model that did
not estimate negative values of solar insolation. Figure 10 shows the model
applied across the study area. The graphs show the pattern of solar
insolation across the two reaches in the study, highlighting the utility of
these methods for predicting solar insolation in heavily forested streams
across wide spatial extents. Figure 11 shows the relative frequency of
binned solar insolation values, highlighting the dominance of heavily shaded
areas (note that a dammed reservoir, point D on the map, contributes the
majority of the points in full sun).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11"><?xmltex \currentcnt{11}?><label>Figure 11</label><caption><p id="d1e1061">Histogram of solar insolation pixel values along reach A–C from Fig. 9.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://hess.copernicus.org/articles/23/2813/2019/hess-23-2813-2019-f11.png"/>

        </fig>

      <p id="d1e1070">The relatively unbiased results shown in Fig. 9 show that field
calibration is not required to produce accurate estimates of solar
insolation. However, information is still needed on local above-canopy
meteorological conditions, which can either be modeled from known solar
outputs or collected from a nearby meteorological station. Little bias was
observed in comparisons between synthetic hemispherical photograph
transmittance and field-based hemispherical<?pagebreak page2821?> photograph transmittance (Table 3). Therefore, both approaches tested in this study should not require field calibration.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <label>4</label><title>Conclusions</title>
      <p id="d1e1082">We tested two approaches for estimating solar insolation from airborne lidar
using field data collected in a heavily forested narrow stream, showing that
an LPI-based raster approach and a synthetic hemispherical photograph
approach can predict solar insolation and light transmittance. These results
should be interpreted with the caveat that our point locations contained few
areas with high insolation. We showed that the LPI-based model can be
applied across the landscape, and we demonstrated that no field-based
calibration was necessary to produce unbiased prediction of solar
insolation.</p>
      <p id="d1e1085">This study lays the groundwork for additional research on remote sensing
methods for quantifying light conditions in riparian areas over heavily
forested streams. One method that we were unable to test is ray-tracing, and
future research should continue to develop this approach. Second, research
should focus on exploring the limit of matching ground-based measurements to
lidar-predicted solar insolation. Lastly, the limitation of aerial lidar to
quantify understory light conditions in multi-layered canopies should be
explored in more detail to better understand when and if airborne sensors
are inappropriate for these particular applications. In these circumstances,
other sensors such as terrestrial lidar or ground-based digital photographs
utilizing structure from motion may provide additional useful information.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e1093">The GPS data, pyranometer data, processed hemispherical photograph data, spreadsheets used for data analysis, and access to the lidar data can be found at <uri>https://doi.org/10.17632/vwmxw4hcj7.1</uri> (Richardson, 2018).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e1102">JJR, LLM, and CET designed the study design. LLM and CET secured funding. JJR performed the data analysis and prepared a draft of the manuscript. CET provided review and editing of the manuscript.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e1108">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e1114">We are grateful to Dave Moeser for sharing his MATLAB code for creating
synthetic hemispherical photographs and to Keith Musselman for advising on
the applicability of ray-tracing methods. Guang Zheng also assisted with
research into ray-tracing methods. Caileigh Shoot and Natalie Gray
coordinated field data collection. This work was supported by the Precision
Forestry Cooperative, the Bureau of Land Management, and the US Geological
Survey. Any use of trade, product or firm names is for descriptive purposes
only and does not imply endorsement by the US government.</p></ack><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e1119">This paper was edited by Martijn Westhoff and reviewed by Collin Bode, Caleb Buahin, and one anonymous referee.</p>
  </notes><ref-list>
    <title>References</title>

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    <!--<article-title-html>Lidar-based approaches for estimating solar  insolation in heavily forested streams</article-title-html>
<abstract-html><p>Methods to quantify solar insolation in riparian landscapes are needed due
to the importance of stream temperature to aquatic biota. We have tested
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pyranometers placed in the stream channel. We apply the LPI-based model to
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